PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF008600030CFD_t1
Common NameTRAES_3BF008600030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 295aa    MW: 30818.5 Da    PI: 6.4175
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF008600030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.93.2e-284107199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C ++C+++p++     +++q++++ +++k++G++ +l+ll+a  +  r+++++sl+yeA+ r+ +PvyG+vg+++
  TRAES3BF008600030CFD_t1   4 SCNGCRVLRKGCGEGCTIRPCLewirsADAQANATVFLAKFYGRAGLLNLLAADGPGLRPALFRSLLYEACGRMVNPVYGSVGLLW 89 
                              6*********************9999667889****************************************************** PP

                   DUF260  82 klqqqleqlkaelallke 99 
                              ++q++ +q+++e++l ++
  TRAES3BF008600030CFD_t1  90 SGQWEACQAAVEAVLKGR 107
                              ***********9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0393109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGEGCT IRPCLEWIRS ADAQANATVF LAKFYGRAGL LNLLAADGPG  60
LRPALFRSLL YEACGRMVNP VYGSVGLLWS GQWEACQAAV EAVLKGRPIV RVTSDAPLAA  120
CDIRHVAKAD RPAASPEAAA AAGTVLGVSR AGRTGFKRAS SSTAKPKSKS FSGAKHDGGL  180
DQAPSHEESA GSHDHGSHVE DDGMAVEQAR EEESSEGTDV DAGSHVSQAE RSPVPPVAQD  240
EEAHDDEIGL ELTLGFQQVT PRVVARSPPA GARFGASSSS AESRHIGLLL ELPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577486.11e-115PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9M8866e-69LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A077RA140.0A0A077RA14_WHEAT; Uncharacterized protein
STRINGBRADI4G16740.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.19e-65LOB domain-containing protein 40
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]